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tutorial· Intermediate· 6 min read· updated 2026-01-28

Harvest and filter

Straining, bottling, storing, and what to do with the leftover pulp on day ninety.

The day-ninety harvest is anticlimactic in the best way. If the batch smells right, the rest is just kitchen work.

What you need

  • A large bowl.
  • A colander or coarse sieve.
  • A piece of clean muslin, an old cotton T-shirt or a coffee filter.
  • Bottles for storage — plastic or glass; both are fine now that the fermentation is finished.
  • A funnel, if the bottle openings are narrow.

Step by step

  1. 1

    Pour off the liquid

    Open the container over the bowl and pour the liquid through the colander. The scraps stay behind. The liquid should be amber and mostly clear.

  2. 2

    Squeeze the scraps

    Lift the scraps out with a spoon or gloved hand and squeeze the last of the liquid out over the colander. The pulp should look tired and pale.

    tip — Do not skip this step. A significant amount of the finished liquid is held in the scraps.

  3. 3

    Second filter

    Line the colander with the muslin or cloth and pour the liquid through a second time. This catches the sediment. If you want a very clear liquid, filter a third time through a coffee filter.

  4. 4

    Bottle

    Funnel the liquid into bottles. Leave a couple of centimetres of headspace in case there is any residual gas. Label with the date.

  5. 5

    Rest

    Let the bottles sit for a week before using. Any last cloudiness settles to the bottom and the liquid clarifies further.

Filtered eco enzyme keeps almost indefinitely. Community reports of five-year-old bottles being fine are common. If a bottle ever grows fuzzy mould, discard it; that is a sign of contamination after bottling.

What to do with the pulp

The pulp is not waste. A few options, in rough order of usefulness:

  1. Bury it under a fruit tree or in a garden bed. It composts quickly and feeds the soil.
  2. Add a small handful to your next batch as a starter. Not required, but it helps a new batch establish itself faster.
  3. Dry it in the sun and grind it as a mild soil amendment.
  4. Add it to a home compost bin. Do not use it in a worm bin; the acidity is too high.

Storage

Store bottles somewhere dark and reasonably cool. A cupboard is fine; a refrigerator is unnecessary. Direct sun over months will fade the colour and, over years, weaken it.

Community practice: many people keep the first bottle from each batch unopened as an archive, and open it a year later to compare. There is no science behind this beyond curiosity, but it is a nice ritual.

Last reviewed: 2026-01-28